Code

Github organizations we contribute to:

• cufctl
• scidas
• SystemsGenetics

Selected projects:

• bentsherman/pbs-toolkit: Collection of helpful scripts for using a PBS cluster

• bentsherman/tesseract: A tool for creating resource prediction models for scientific workflows

• ctargon/stride: A generalized deep learning approach for local structure identification in molecular simulations

• ctargon/TSPG: Transcriptome State Perturbation Generator

• cufctl/mlbd: Website for MLBD Creative Inquiry, contains Jupyter notebooks and other resources for machine learning and high-performance computing

• cufctl/face-recognition: A GPU-accelerated real-time face recognition system

• scidas/nextflow-api: A web service for managing Nextflow pipelines on Kubernetes

• sufengniu/GVIN: Generalized Value Iteration Networks

• SystemsGenetics/BioDepVis: Visualization tool for large biological networks
• SystemsGenetics/gene-oracle: Feature selection tool for high-dimensional omic data
• SystemsGenetics/KINC: Tool for contsructing co-expression networks from high-dimensional omic data
• SystemsGenetics/kube-runner: Tool for running Nextflow pipelines on a Kubernetes cluster